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Gene family contraction and expansion

WebThe expansion or contraction of gene families is an important factor in species differentiation, phenotypic diversification, and adaptation to natural changes [127, 128]. Similarly,... WebBy addressing selection within sets of paralogous Or and Gr expansions, for the first time in an insect species, we show that the most recently duplicated loci have evolved under positive selection, which might be related to the high degree of …

Heterogeneity of cancer-associated fibroblasts in head and neck ...

WebJan 3, 2024 · Gene families can expand and contract over evolutionary time scales. Gene complexes are groups of genes that work in a fashion similar to gene families; however, … WebContraction deletes divergent gene copies and keeps gene families from becoming too large. Expansion replaces lost gene copies and prevents gene families from becoming … alcatel evolve 2 https://baqimalakjaan.com

Frontiers A chromosome-scale genome assembly of …

WebApr 13, 2024 · Head and neck squamous cell carcinoma (HNSCC) is among the most severe and complex malignant diseases with a high level of heterogeneity and, as a result, a wide range of therapeutic responses ... Genome assemblies and predicted proteomes for each of the 24 fungal taxa showed high levels of completeness based on BUSCO scores of 95% or higher (Additional file 1). Overall, 95% of the predicted protein sequences across all the taxa were assigned to a gene family, with a total of 19,750 gene families identified. … See more Across the time-calibrated phylogeny of the 24 fungal taxa examined in this study, CAFE4 identified 422 gene families evolving at a non … See more To further screen rapidly evolving gene families in the genus Calonectria and non-Calonectria pathogens of hosts in Buxaceae for … See more While 422 gene families were identified by CAFE4 as rapidly evolving across the phylogeny, only those rapidly evolving at terminal taxa were … See more WebAug 26, 2024 · Gene family expansion and contraction are generally considered important evolutionary mechanisms that contribute to evolutionary adaption to the environment [45,46]. To reveal gene family expansion and contraction related to environmental stress in ‘Changxianggeng 1813’, we undertook a computational analysis … alcatel exite cell phone sar

CAFE_fig, a visualization tool for CAFE. - Github

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Gene family contraction and expansion

Complete Chloroplast Genomes of Anthurium huixtlense and

WebWe observed different gene family expansion/contraction histories for plant cell wall degrading enzymes in core polyporoids and phlebioids and captured expansions for genes involved in signalling and regulation in the lineages of white rotters. WebSep 5, 2024 · Summary tree that shows the average expansion/contraction (radius of node circles), the numbers of expanded/contracted families (+/-), and the estimated gene gain/loss rates (blue: low rate; red: high rate). Example output for a specific gene family. Numbers and node sizes represent the family size at each node.

Gene family contraction and expansion

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WebThe gene families that have undergone expansion and contraction are shown in green and red, respectively. The numbers separated by slashes (expansions/contractions) indicate the number of... WebEstimation of gene family expansion and contraction using CAFE. (a) Clock calibrated phylogenetic tree showing the number of gene families significantly (P-value ≤ 0.01) expanded (red),...

WebPhylogenetic tree, gene family contraction and expansion and time line divergence of pineapple among the subclass Commelinidae. The phylogenetic tree was constructed using 409 single-copy-genes... WebApr 7, 2024 · Software for Computational Analysis of gene Family Evolution. The purpose of CAFE is to analyze changes in gene family size in a way that accounts for …

WebAug 30, 2024 · Rosa lucieae is one of the famous wild ancestors of cultivated roses and plays a very important role in horticultural research, but there is still a lack of research on the R. lucieae chloroplast genome. In this study, we used the Illumina MiSeq platform for sequencing, assembly, and annotation to obtain the R. lucieae chloroplast genome … WebApr 1, 2024 · Further analysis of gene family expansion and contraction revealed that 252 gene families expanded and 52 gene families contracted in the olive genome (Fig. 4c ). These 252 expanded...

WebThis is a list of gene families or gene complexes, i.e. sets of genes which are related ancestrally and often serve similar biological functions.These gene families typically …

WebAug 21, 2014 · Genome dynamics in prokaryotes: extensive gene family loss and gain dominate over family expansion and reduction. We employed an updated version of the ATGCs [] to reconstruct the genome evolution for 34 groups of bacteria and one group of archaea (Additional file 1: Table S1 and Additional file 2: Figure S1).From the clusters of … alcatel f230 versatisWebFeb 17, 2024 · Genome-wide analyses included gene family expansion/contraction, positive selection, and diverged sequence (acceleration) compared to other placental mammals, identifying selection in... alcatel f250WebJul 17, 2024 · Expansions and contractions in gene families of independently-evolved blood-feeding insects. Our results reveal a new set of candidate genes to be explored in … alcatel f330